Install and contribute


Mandatory dependencies

  • numpy
  • six

Optional dependencies

  • pandas
  • spc
  • pyopenms


You can install the dependencies via pip:

pip install -r requirements.txt

You can clone it and run the file. Use the following commands to get a copy from Github and install:

git clone
cd specio
pip install .

You can also install the master branch directly with pip:

pip install git+

Test and coverage

You want to test the code before to install:

$ make test

You wish to test the coverage of your version:

$ make coverage


You can contribute to this code through Pull Request on GitHub. Please, make sure that your code is coming with unit tests to ensure full coverage and continuous integration in the API.